School of Molecular and Microbial Biosciences
The University of Sydney
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Exon Array Analysis Tool

Gene and Exon Lists

 

Click on images for a normal screen-sized view

  • Genes and Exons shown using their most recent names and abbreviations.
  • Intensity data for each gene/exon is displayed for each array (or average of arrays, as you choose).
  • Dynamically choose which fold-change to show.
  • Save the currently displayed list of genes/exons as a Set.
  • Expand gene lists to associated exon lists and vice versa.
Exon Array Solution - List of Genes
Exon Array Solution - List of Exons

Gene Detail

 
  • Displays the most recent ontological information.
  • Shows the behaviour of each of the exons associated with the gene.
  • Buttons to ‘break out’ to useful web-sites of your choice (eg, xmap, Harvester, Entrez).
Exon Analysis Tool - Gene Detail

Easy Searching

 
  • Search for genes or exons using both behaviour (gene intensity, fold-change) and ontology.
  • Even searching for exons that behave one way that are contained within genes that behave another way (and vice versa) is possible.
  • Restrict the searches to previously saved sets of exons or genes
    Perform just about any number of AND/OR/NOT requests in each query
Exon Solution - Finding Exons

Sets of Genes and Exons

 
  • Lists and manages your saved sets of interesting genes and exons
  • Expand sets of genes to show all the exons associated with those genes. Condense lists of exons to their relevant genes.
  • Select sets for viewing and printing.
  • Import and Export sets of genes to share with colleagues.
  • Select sets for cross-comparison using Venn Diagrams.
Exon Analysis Tool - Managing Sets

Venn Diagrams

 
  • Draw 2- or 3-way Venn Diagrams for selected sets of genes or exons.
  • View the list of genes/exons associated with any sector on the diagram.
  • More than 3 sets can be compared in customised versions.
Exon Analysis Tool - 3-way Venn Diagram
Exon Analysis Tool - 2-way Venn Diagram

Summary

Rapidly analyse Affymetrix Expression Console data. Search both exon and gene data to create ‘sets’ which are then combined in elegant Venn Diagrams.
Key features:

Contact

A/Prof Gareth Denyer

+61 (02) 9351 3466