School of Molecular and Microbial Biosciences
The University of Sydney
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Gene Array Analysis Tool

Gene Lists

 

Click on images for a normal screen-sized view

  • Genes shown using their most recent names and abbreviations.
  • Intensity data for each gene is displayed for each array (or, in customised solutions, average of arrays, etc).
  • Dynamically choose which fold-change to show.
  • Save the currently displayed list of genes as a Set.
Gene Array Solution - List of Genes

Gene Detail

 
  • Displays the most recent ontological information.
  • Shows the behaviour of the gene on each of the arrays along with all the inter-array comparisions.
  • Buttons to ‘break out’ to useful web-sites of your choice (eg, xmap, Harvester, Entrez).
Gene Analysis Tool - Gene Detail

Easy Searching

 
  • Search for genes using both behaviour (gene intensity, fold-change) and ontology.
  • Easily build complex multi-layered queries using just about any combination of AND/OR/NOT requests.
  • Restrict the searches to previously saved sets of exons or genes.
Gene Solution - Finding Genes

Sets of Genes

 
  • Lists and manages your saved sets of interesting genes.
  • Select sets for viewing and printing.
  • Import and Export sets of genes to share with colleagues.
  • Select sets for cross-comparison using Venn Diagrams.
Gene Analysis Tool - Managing Sets

Venn Diagrams

 
  • Draw 2- or 3-way Venn Diagrams for selected sets of genes.
  • View the list of genes associated with any sector on the diagram.
  • More than 3 sets can be compared on request.
Gene Analysis Tool - 2-way Venn Diagram
Gene Analysis Tool - 3-way Venn Diagram

Summary

Get rapid results from your 3’ or new GENE Affymetrix arrays. Search both gene data and ontologies to create ‘sets’ which are then combined in elegant Venn Diagrams.
Key features include:

Contact

A/Prof Gareth Denyer

+61 (02) 9351 3466